Publications

(2020). Unsupervised Learning and Statistical Shape Modeling of the Morphometry and Hemodynamics of Coarctation of the Aorta. accepted for publication at MICCAI 2020.

Project Conference

(2020). Anatomical Landmark Detection From X-Ray Images Using Convolutional Neural Networks. Master thesis in Computer Science, Universität Hamburg.

(2020). Characterization of the Airflow within an Average Geometry of the Healthy Human Nasal Cavity. Sci Rep 10, 3755.

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(2020). Automatic Quantification of Hip Osteoarthritis From Low Quality X-Ray Images. Proc. SPIE, Medical Imaging 2020.

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(2020). Morphological Indicators for Limitations in Nasal Breathing. Bachelor thesis in bioinformatics, Freie Universität Berlin.

(2019). Clinical Benefits of Combining Different Visualization Modalities in Neurosurgery. Front. Surg. 6:56.

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(2019). Aortic Shape Synthesiser - Understanding Anatomical Variations of the Thoracic Aorta. ESC Congress 2019.

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(2019). Statistical Shape Models - Understanding and Mastering Variation in Anatomy. Advances in Experimental Medicine and Biology book series (AEMB, volume 1156).

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(2019). Validation of a Statistical Shape Model for Acetabular Bone Defect Analysis. Orthopaedic Proceedings Vol. 101-B, No. SUPP_5, International Society for Technology in Arthroplasty (ISTA) 31st Annual Congress, London, England, October 2018. Part 2..

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(2019). The Healthy Nasal Cavity - Characteristics of Morphology and Related Airflow Based on a Statistical Shape Model Viewed From a Surgeons Perspective. Facial Plast Surg 2019; 35(01): 009-013.

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(2019). Digital Analysis of Nasal Airflow Facilitating Decision Support in Rhinosurgery. Facial Plast Surg 2019; 35(01): 003-008.

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(2019). Deep Learning for Boundary Detection in Model-Based Segmentation. Master Thesis in Biomedical Computing, Technical University of Munich.

(2018). 3D Shape Analysis for Coarctation of the Aorta. Shape in Medical Imaging. MICCAI-ShapeMI 2018. Lecture Notes in Computer Science, vol 11167.

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(2017). Geometrische Rekonstruktion von Anatomischen Strukturen des Kopfes aus Tomographischen Daten. Master Thesis in Medieninformatik, Beuth Hochschule Berlin.

(2017). Evaluating two Methods for Geometry Reconstruction from Sparse Surgical Navigation Data. Proc. 16. Jahrestagung der Deutschen Gesellschaft für Computer-Roboterassistierte Chirurgie (CURAC), vol. 16, pp. 24-30, 2017.

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(2017). Validation of Three Dimensional Models of the Distal Femur Created From Surgical Navigation Point Cloud Data for Intraoperative and Postoperative Analysis of Total Knee Arthroplasty. International Journal of Computer Assisted Radiology and Surgery volume 12, pp. 2097–2105 (2017).

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(2017). Shape Aware Surface Reconstruction From Sparse 3D Point Clouds. Medical Image Analysis, Volume 38, May 2017, Pages 77-89.

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(2016). Robust and Accurate Appearance Models Based on Joint Dictionary Learning: Data From the Osteoarthritis Initiative. Patch-Based Techniques in Medical Imaging. MICCAI-Patch-MI 2016. Lecture Notes in Computer Science, vol 9993.

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(2015). Reconstruction of Partial Liver Shapes Based on a Statistical 3D Shape Model. Proc. Symposium on Statistical Shape Models & Applications (SHAPE), 2015.

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(2015). Statistical Shape Modeling of Musculoskeletal Structures and Its Applications. Zheng G., Li S. (eds) Computational Radiology for Orthopaedic Interventions. Lecture Notes in Computational Vision and Biomechanics, vol 23. Springer, Cham (2015).

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(2015). Landmarken-basierte 2d-3d Objektpositionierung. Bachelor Thesis in Medieninformatik, Beuth Hochschule Berlin.

(2015). Deformable Meshes for Accurate Automatic Segmentation of Medical Image Data. PhD thesis in Computer Science, Universität Lübeck.

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(2014). Development of a computed tomography data-based Vibrant Bonebridge viewer. HNO 62, 439–442 (2014).

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(2014). Fitting Smooth Strips to Rough Surfaces. Diploma Thesis in Computer Science, Freie Universität Berlin.

(2014). A Computed Tomographic Data Based Vibrant Bonebridge Visualization Tool. Cochlear Implants Int. 2014 May;15 Suppl 1:S72-4.

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(2014). Robust Measurement of Natural Acetabular Orientation From AP Radiographs Using Articulated 3D Shape and Intensity Models. Proc. Int. Society of Computer Assisted Orthopaedic Surgery (CAOS), 2014.

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(2014). Image Processing. MATHEON - Mathematics for Key Technologies (P. Deuflhard et al., eds.), EMS Publishing House, pp. 359-376, 2014.

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(2014). Frame Based Cranial Reconstruction. J Neurosurg Pediatr. 2014 Mar;13(3):319-23.

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(2013). Fast Generation of Virtual X Ray Images for Reconstruction of 3D Anatomy. IEEE Trans Vis Comput Graph. 2013 Dec;19(12):2673-82.

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(2013). Interaktives Planungstool Zur 3D Rekonstruktion Von Knochenresektion. Bachelor Thesis in Medieninformatik, Beuth Hochschule Berlin.

(2013). Visual Support for the Positioning of Hearing Implants. Proc. 12. Jahrestagung der Deutschen Gesellschaft für Computer-Roboterassistierte Chirurgie (CURAC), 2013.

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(2013). Omnidirectional Displacements for Deformable Surfaces. Medical Image Analysis, 17(4), pp. 429-441, Elsevier, 2013.

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(2013). Landmark Based Statistical Shape Analysis. Auxology. Studying Human Growth and Development (M. Hermanussen, ed.), Schweizerbart Science Publishers, Stuttgart, pp. 200-203, 2013.

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(2013). Articulated Statistical Shape Models. Master thesis in Computer Science, Humboldt-Universität zu Berlin.

(2012). Flexible Shape Matching With Finite Element Based LDDMM. International Journal of Computer Vision, volume 105, pages 128–143 (2013).

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(2012). Feature Preserving Multi Material Mesh Generation Using Hierarchical Oracles. Mesh Processing in Medical Image Analysis 2012. MICCAI-MeshMed 2012. Lecture Notes in Computer Science, vol 7599.

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(2012). Automatic Detection and Classification of Teeth in CT Data. Medical Image Computing and Computer-Assisted Intervention – MICCAI 2012. MICCAI 2012. Lecture Notes in Computer Science, vol 7510.

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(2012). Efficient Projection and Deformation of Volumetric Intensity Models for Accurate Simulation of X-Ray Images. Eurographics Workshop on Visual Computing for Biology and Medicine (VCBM), 2012.

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(2012). Automatic Liver Segmentation in Contrast Enhanced CT Data Using 3D Free Form Deformation Based on Optimal Graph Searching. Master thesis in Biomedical Engineering, Politecnico di Milano, Italy.

(2012). Fast and Accurate DRRs for X-Ray Based Joint Surgery Planning. Proc. Int. Society of Computer Assisted Orthopaedic Surgery (CAOS), no. 293, 2012.

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(2012). Analysis of Inter Individual Anatomical Shape Variations of Joint Structures. Proc. Int. Society of Computer Assisted Orthopaedic Surgery (CAOS), no. 210, 2012..

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(2012). Automatic Bone and Tooth Detection for CT Based Dental Implant Planning. Computed maxillofacial imaging in dental implantology. Int J CARS 7, 293–294 (2012).

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(2012). Simulating X Ray Images From Deformable Shape and Intensity Models on the GPU. Master thesis in Computer Science, Technische Universität Berlin.

(2012). Generation of Contrained High Quality Mult Material Tetrahedral Meshes. Diploma thesis in Mathematics, Freie Universität Berlin.

(2012). Automatic Segmentation for Dental Operation Planning. Diploma thesis in Computer Science, Technische Universität Dresden.

Project

(2012). Ein kontinuierliches Optimierungsverfahren für die Segmentierung medizinischer Bilddaten mit Hilfe von Formmodellen. Diploma thesis in Mathematics, Humboldt Universität Berlin.

(2011). Robust and Intuitive Meshing of Bone Implant Compounds. Proc. 10. Jahrestagung der Deutschen Gesellschaft für Computer-Roboterassistierte Chirurgie (CURAC), pp. 71-74, 2011.

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(2011). Digital Morphometry the Potential of Statistical Shape Models. Anthropologischer Anzeiger Volume 68 No. 4 (2011), pp. 505-506.

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(2011). Direct LDDMM of Discrete Currents With Adaptive Finite Elements. Proc. 3rd MICCAI Workshop on Mathematical Foundations of Computational Anatomy (X. Pennec et al., eds.), pp. 1-15, 2011.

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(2011). Improvement of Image Segmentation Based on Statistical Shape and Intensity Models. Master thesis in Computer Science, Faculté des Sciences Appliquées, Université Libre de Bruxelles.

(2011). Nichtlineare Registrierung Zur Segmentierung Des Musculus Gluteus Medius in CT Daten. Master thesis in Mathematics, Universität zu Lübeck.

(2011). Temporal Subtraction of Chest Radiographs Compensating Pose Differences. Proceedings Volume 7962, SPIE Medical Imaging 2011: Image Processing; 79620U (2011).

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(2011). Automatic Calibration of 3D Ultrasound Probes. Bildverarbeitung für die Medizin 2011. Informatik aktuell.

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(2011). An Articulated Statistical Shape Model of the Human Knee. Bildverarbeitung für die Medizin 2011. Informatik aktuell.

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(2011). Bildsegmentierung. Computerassistierte Chirurgie (P. M. Schlag et al., eds.), Urban & Fischer (Elsevier), pp. 63-83, 2011.

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(2010). Modellgestützte chirurgische Rekonstruktion komplexer Mittelgesichtsfrakturen. Biomed Tech 2010; 55 (Suppl. 1), pp. 107-108, 2010 by Walter de Gruyter, Berlin, New York.

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(2010). Automatische 3D-Rekonstruktion des Unterkiefers und der Mandibulärnerven auf Basis dentaler Bildgebung. Biomed Tech 2010; 55 (Suppl. 1), pp. 35-36, 2010 by Walter de Gruyter, Berlin, New York.

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(2010). Interaktive Erzeugung homöomorpher Netze auf triangulierten Oberflächen. Diploma thesis in Computer Science, Freie Universität Berlin.

(2010). Model Based Auto Segmentation of Knee Bones and Cartilage in MRI Data. Proc. MICCAI workshop Medical Image Analysis for the Clinic: A Grand Challenge (B. v. Ginneken et al., eds.), 2010.

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(2010). Improving Deformable Surface Meshes Through Omni Directional Displacements and MRFs. Jiang T., Navab N., Pluim J.P.W., Viergever M.A. (eds) Medical Image Computing and Computer-Assisted Intervention – MICCAI 2010. MICCAI 2010. Lecture Notes in Computer Science, vol 6361. Springer, Berlin, Heidelberg.

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(2010). Atlas to Image With Tumor Registration Based on Demons and Deformation Inpainting. The MIDAS Journal - Computational Imaging Biomarkers for Tumors (CIBT) (2010).

Paper Journal

(2010). The Digital Bee Brain: Integrating and Managing Neurons in a Common 3D Reference System. Front. Syst. Neurosci., 13 July 2010.

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(2010). Subject Specific Ligament Models Toward Real Time Simulation of the Knee Joint. Miller K., Nielsen P. (eds) Computational Biomechanics for Medicine. Springer, New York, NY (2010).

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(2009). A System for Unsupervised Extraction of Orthopaedic Parameters From CT Data. GI Workshop ‘Softwareassistenten - Computerunterstützung für die medizinische Diagnose und Therapieplanung’, pp. 1328-1337, 2009.

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(2009). Multi-Object Segmentation With Coupled Deformable Models. Annals of the BMVA Vol. 2009, No. 5, pp 1–10 (2009).

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(2009). Adaptive Tetrahedral Meshing for Personalized Cardiac Simulations. CI2BM09 - MICCAI Workshop on Cardiovascular Interventional Imaging and Biophysical Modelling, Sep 2009, London, United Kingdom. pp.149-158.

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(2009). An Articulated Statistical Shape Model for Accurate Hip Joint Segmentation. Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Minneapolis, MN, 2009, pp. 6345-6351.

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(2009). Automatic Extraction of Mandibular Nerve and Bone From Cone Beam CT Data. Yang GZ., Hawkes D., Rueckert D., Noble A., Taylor C. (eds) Medical Image Computing and Computer-Assisted Intervention – MICCAI 2009. MICCAI 2009. Lecture Notes in Computer Science, vol 5762. Springer, Berlin, Heidelberg.

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(2009). 3D Reconstruction of the Human Rib Cage From 2D Projection Images Using a Statistical Shape Model. Int J CARS 5, 111–124 (2010).

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(2009). Multi-Object Segmentation of Head Bones. The MIDAS Journal - Head and Neck Auto-Segmentation Challenge (2009).

Paper Journal

(2009). Computergestützte Planung zur Chirurgischen Korrektur Von frühkindlichen Schädelfehlbildungen (Craniosynostosen). face - international magazine of orofacial esthetics, 02/09, pp. 48-53, 2009.

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(2009). Comparison and Evaluation of Methods for Liver Segmentation From CT Datasets. IEEE Transactions on Medical Imaging, vol. 28, no. 8, pp. 1251-1265, Aug. 2009.

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(2008). Variational and Statistical Shape Modeling for 3D Geometry Reconstruction. PhD thesis in mathematics and computer science, Freie Universität Berlin.

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(2008). 3D Ultrasound-CT Registration of the Liver Using Combined Landmark Intensity Information. Int J CARS 4, 79–88 (2009).

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(2008). Towards Model Based 3-D Reconstruction of the Human Rib Cage From Radiographs. Proc. 7. Jahrestagung der Deutschen Gesellschaft für Computer-Roboterassistierte Chirurgie (CURAC), 2008..

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(2008). Automatic Segmentation of the Pelvic Bones From CT Data Based on a Statistical Shape Model. EG VCBM'08: Proceedings of the First Eurographics conference on Visual Computing for BiomedicineOctober, 2008, Pages 93–100.

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(2008). Extraction of Feature Lines on Surface Meshes Based on Discrete Morse Theory. Computer Graphics Forum, 27: 735-742 (2008).

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(2008). Model-based autosegmentation of the central brain of the honeybee, Apis mellifera, using active shape models.

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(2008). Adaptive Remeshing of Non Manifold Surfaces. Eurographics 2008, Annex to the Conf. Proc., 2008, pp. 207-211.

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(2008). Visualizing Morphogenesis and Growth by Temporal Interpolation of Surface-Based 3D Atlases. 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Paris, 2008, pp. 824-827.

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(2008). Coupling Deformable Models for Multi Object Segmentation. Bello F., Edwards P.J.E. (eds) Biomedical Simulation. ISBMS 2008. Lecture Notes in Computer Science, vol 5104. Springer, Berlin, Heidelberg.

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(2008). Validation Metrics for Non Rigid Registration of Medical Images Containing Vessel Trees. Tolxdorff T., Braun J., Deserno T.M., Horsch A., Handels H., Meinzer HP. (eds) Bildverarbeitung für die Medizin 2008. Informatik aktuell. Springer, Berlin, Heidelberg.

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(2008). Segmentation of Bony Structures With Ligament Attachment Sites. Tolxdorff T., Braun J., Deserno T.M., Horsch A., Handels H., Meinzer HP. (eds) Bildverarbeitung für die Medizin 2008. Informatik aktuell. Springer, Berlin, Heidelberg..

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(2008). Aufbau und Analyse eines Statistischen Formmodells des Gehirns der Honigbiene Apis Mellifera. Bachelor thesis in Bioinformatics, Freie Universität Berlin.

(2008). Computerassistierte Leberchirurgie: Wie Computer die Leber in Medizinischen Bilddaten automatisch erkennen. Berlin Medical Journal, Heft 1, January, 2008.

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(2007). Adaptives Remeshing von Nicht-Mannigfaltigen Dreicksnetzen. Diploma thesis in Computer Science, Freie Universität Berlin.

(2007). Shape-Constrained Automatic Segmentation of the Liver Based on a Heuristic Intensity Model. Proc. MICCAI Workshop on 3D Segmentation in the Clinic: A Grand Challenge (T. Heimann at al., eds.), pp. 109-116, 2007.

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(2007). A Method for the Three Dimensional Statistical Shape Analysis of the Bony Orbit. Proc. Computer Aided Surgery around the Head (CAS-H) (W. Freysinger et al., eds.), Pro Business Verlag, pp. 94-97, 2007.

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(2007). Model Based Autosegmentation of Brain Structures in the Honeybee Apis Mellifera. Bachelor thesis in Bioinformatics, Freie Universität Berlin.

(2007). Model-based Autosegmentation of Brain Structures in the Honeybee using Statistical Shape Models. Proc. 8th Int. Congr. of Neuroethology (ICN), 2007.

Conference

(2007). A Distance Measure for Non Rigid Registration of Geometrical Models to Intensity Data. Image Processing and Visualization ISCAS. Int J CARS 2, 204–217 (2007).

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(2007). A New Class of Distance Measures for Registration of Tubular Models to Image Data. Horsch A., Deserno T.M., Handels H., Meinzer HP., Tolxdorff T. (eds) Bildverarbeitung für die Medizin 2007. Informatik aktuell. Springer, Berlin, Heidelberg.

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(2006). Atlas-based 3D-Shape Reconstruction from X-Ray Images. 8th International Conference on Pattern Recognition (ICPR'06), Hong Kong, 2006, pp. 371-374.

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(2006). Automatic Segmentation of Mandibles in Low Dose CT Data. A New Cone-beam Computed Tomography System for Dental Applications with Innovative 3D Software. Int J CARS 1, 393-395 (2006).

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(2006). Surgical Treatment of Craniosynostosis Based on a Statistical 3D Shape Model: First Clinical Application. Computer Supported Pre-operative Simulation of Neonatus Cranial Bone Bending in Craniosynostosis Surgery Planning. Int J CARS 1(1), 253-254 (2006).

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(2006). Is the Course of the Mandibular Nerve Deducible From the Shape of the Mandible?. Image-Guided Implantology and Bone Assessment. Int J CARS 1(1), 415-417 (2006).

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(2006). Atlas-basierte 3D-Rekonstruktion des Beckens aus 2D-Projektionsbildern. Handels H., Ehrhardt J., Horsch A., Meinzer HP., Tolxdorff T. (eds) Bildverarbeitung für die Medizin 2006. Informatik aktuell. Springer, Berlin, Heidelberg.

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(2006). Consistent Cell Decomposition of Homeomorphic Simplicial Surfaces. Diploma thesis in Mathematics, Freie Universität Berlin.

(2006). Registration of different phases of contrast‐enhanced CT/MRI data for computer‐assisted liver surgery planning: Evaluation of state‐of‐the‐art methods. Int. J. Med. Robotics Comput. Assist. Surg., 1: 6-20 (2006).

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(2005). Medical Applications for Statistical 3D Shape Models. Proc. Computer Aided Surgery around the Head (CAS-H), Fortschritt-Berichte VDI (S. Weber et al., eds.), 17 (258), p. 61, 2005.

(2005). Capturing Anatomical Shape Variability Using B-Spline Registration. Christensen G.E., Sonka M. (eds) Information Processing in Medical Imaging. IPMI 2005. Lecture Notes in Computer Science, vol 3565. Springer, Berlin, Heidelberg.

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(2005). Registration of Portal and Hepatic Venous Phase of MR/CT Data for Computer Assisted Liver Surgery Planning. Proc. Computer Assisted Radiology and Surgery (CARS) (H. Lemke et al, eds.), Int. Congress Series (1281), Elsevier, pp. 768-772, 2005.

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(2005). Reconstruction of Mandibular Dysplasia Using a Statistical 3D Shape Model. Proc. Computer Assisted Radiology and Surgery (CARS) (H. Lemke et al, eds.), Int. Congress Series (1281), Elsevier, pp. 1238-1243, 2005.

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(2005). Statistical Shape Modeling for Craniosynostosis Planning. Proc. 2nd International Congress on Advanced Digital Technology in Head and Neck Reconstruction, 2005.

Conference

(2004). Volumetrische Registrierung Zur Medizinischen Bildanalyse. Diploma thesis in Computer Science, Humboldt Universität Berlin.

(2004). Registration of Different Phases of Contrast Enhanced MR Data for Liver Surgery. Proc. 3. Jahrestagung der Deutschen Gesellschaft für Computer-Roboterassistierte Chirurgie (CURAC), 2004.

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(2004). Augmenting Intraoperative 3D Ultrasound with Preoperative Models for Navigation in Liver Surgery. In: Barillot C., Haynor D.R., Hellier P. (eds) Medical Image Computing and Computer-Assisted Intervention – MICCAI 2004. MICCAI 2004. Lecture Notes in Computer Science, vol 3217. Springer, Berlin, Heidelberg.

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(2004). Ultrasound Based Navigation System Incorporating Preoperative Planning for Liver Surgery. Proc. Computer Assisted Radiology and Surgery (CARS) (H. Lemke et al, eds.), International Congress Series, Volume 1268, June 2004, Pages 758-763.

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(2004). The Impact of Segmentation Accuracy on Treatment Planning for Regional Hyperthermia. Proc. of the 9th International Congress on Hyperthermic Oncology (2004).

(2004). Technical Aspects and Results of Surgery for Craniosynostosis. Zentralbl Neurochir 2004; 65(2): 65-74.

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(2004). A 3D Statistical Shape Model of the Pelvic Bone for Segmentation. Proc. SPIE 5370, Medical Imaging 2004: Image Processing, (12 May 2004).

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(2004). Das Korrespondenzproblem für Statistische 3D-Formmodelle in Biomedizinischen Anwendungen. Study report in Computer Science, Humboldt Universität Berlin.

(2004). Computerunterstützte Prothesenkonstruktion mittels statistischem Formmodell bei Beckenresektion. Bildverarbeitung für die Medizin 2004. Informatik aktuell.

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(2004). Visualization of the Variability of 3D Statistical Shape Models by Animation. Proc. MMVR 2004; Stud Health Technol Inform. 2004;98:190-6..

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(2003). Erzeugung statistischer 3D-Formmodelle zur Segmentierung medizinischer Bilddaten. Bildverarbeitung für die Medizin 2003. Informatik aktuell.

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(2003). Ein Softwarepaket für die modellbasierte Segmentierung anatomischer Strukturen. Bildverarbeitung für die Medizin 2003. Informatik aktuell.

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(2003). Automatic Segmentation of the Liver for Preoperative Planning of Resections. Proc. MMVR 2003; Stud Health Technol Inform. 2003; 94:171-3.

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(2003). A Statistical Shape Model of the Pelvic Bone for Segmentation. Proc. European Society for Hypertermic Oncology (ESHO), pp. 91-92, 2003.

(2002). Automatische Segmentierung von Lebergewebe für die Präoperative Planung von Resektionen. Proc. 1. Jahrestagung der Deutschen Gesellschaft für Computer- Roboterassistierte Chirurgie (CURAC), 2002.

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(2002). From Image Data to Three Dimensional Models Case Studies on the Impact of 3D Patient Models. Proc. of the Japan Korea Computer Graphics Conference 2002.

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(2002). A Statistical Shape Model for the Liver. Medical Image Computing and Computer-Assisted Intervention — MICCAI 2002.

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